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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2249605_2250333_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2249605 - 2250333
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAAATTGTAATC
Flanking Amino Acid:
PGCVFLEIDDRAVPLLGYLP
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
46.8
-0.2
1.9
56.26
36.4

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787