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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2250441_2250660_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2250441 - 2250660
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GTAAACTAAACC
Flanking Amino Acid:
RPLMIAVHRKILKFAGQSPF
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
78.2
36.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
80.8
0.69
0.9
80.5
37
Minor 5ss
37.8
-1.4
2.7
44.3
36.8
Minor BPS
49.6
-0
1.9
62.26
42.3

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787