About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2250818_2251230_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2250818 - 2251230
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
GTTGGCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAGAATTAATA
Flanking Amino Acid:
VFIIGRHKVRTSPLNEDVFA
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.3
68.8
43.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.9
0.43
0.9
59
43
Minor 5ss
34.9
-1.7
2.9
40.5
38.8
Minor BPS
51.7
0.05
1.9
66.54
39.7

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787