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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2251890_2252218_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2251890 - 2252218
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TACTTATCTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTACTTATCT
Flanking Amino Acid:
GNCADETQEPITLQQVCADV
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
67.6
0.4
1.1
65
40.3
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
73.7
0.82
1.7
93.25
34.8

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787