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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2252346_2253384_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2252346 - 2253384
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAGAA
U12 Branch Point Sequence:
TAGTCTTTGAGA
Flanking Amino Acid:
EQAMSSEMLGGRRHSASCFL
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
54.8
0.12
1.2
52.7
43.2
Major PPT
87
0.83
0.6
80.7
31.3
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
59.5
0.29
1.6
66.57
40.3

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787