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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2256196_2256674_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2256196 - 2256674
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
TCTTCCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
RSNNGHSCGQGDSPSLERST
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.1
67.1
44.6
Major BPS
100
1.24
0.5
100
0
Major PPT
78.6
0.64
0.7
77.5
24.4
Minor 5ss
38.3
-1.3
3.1
51.6
45.2
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787