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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2262910_2262976_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2262910 - 2262976
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
ACTTCCTTCACA
Flanking Amino Acid:
LLCDYYQSCEFTGLKAEGMR
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
67.8
0.44
1
75
30.1
Major PPT
76.2
0.59
0.8
70.9
30.3
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
71
0.65
1.7
77.53
39.6

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043792
2261309 - 2306781
45473
ENSAPLT00000025064
2262563 - 2306781
44219
ENSAPLT00000011545
2262625 - 2281933
19309