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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2263183_2263480_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2263183 - 2263480
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAAGT
5'SS Class:
major
3'SS Sequence:
TGTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCACTGTTAATT
Flanking Amino Acid:
IYAFSAAFYSAALEKLEERF
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.5
42.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
34.2
-1.8
3.2
50.1
45.7
Minor BPS
51.3
0.12
2
69.41
42

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025064
2262563 - 2306781
44219
ENSAPLT00000011545
2262625 - 2281933
19309
ENSAPLT00000043792
2261309 - 2306781
45473