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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2263658_2264546_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2263658 - 2264546
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGATCTGTAATC
Flanking Amino Acid:
LRNLCINHFLGWLSFEGMLL
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
76.8
33.4
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.1
0.68
0.9
77.2
37.1
Minor 5ss
31.6
-2.1
3.1
39.6
45.9
Minor BPS
56
0.17
2
67.59
38.4

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043792
2261309 - 2306781
45473
ENSAPLT00000025064
2262563 - 2306781
44219
ENSAPLT00000011545
2262625 - 2281933
19309