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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2264701_2265800_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2264701 - 2265800
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTATTGACC
Flanking Amino Acid:
RRRNVTFSQQVANILLDGVK
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
62.5
0.28
1.2
63.5
41.8
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
64.9
0.45
1.6
75.48
34.5

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025064
2262563 - 2306781
44219
ENSAPLT00000011545
2262625 - 2281933
19309
ENSAPLT00000043792
2261309 - 2306781
45473