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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2266541_2267340_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2266541 - 2267340
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
GTTTTTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTAAT
U12 Branch Point Sequence:
GTAATCTCGACT
Flanking Amino Acid:
RGLNIHALLAGLGGGFGYVV
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
60.4
0.26
1.3
61.4
43.2
Major PPT
78
0.63
0.9
71.4
39.5
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
52.8
0.17
1.6
69.63
40.9

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025064
2262563 - 2306781
44219
ENSAPLT00000011545
2262625 - 2281933
19309
ENSAPLT00000043792
2261309 - 2306781
45473