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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2267566_2267962_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2267566 - 2267962
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTC
Flanking Amino Acid:
RRPFILVLAIGALLGLSLML
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84
0.77
0.8
77
36.2
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
65.8
0.48
1.6
73.37
38.4

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043792
2261309 - 2306781
45473
ENSAPLT00000025064
2262563 - 2306781
44219
ENSAPLT00000011545
2262625 - 2281933
19309