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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_22683_23283_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22683 - 23283
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATCTTTTAAAT
Flanking Amino Acid:
METMKQPFLPGEVKTLMIQL
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.5
0.91
0.6
88.8
20.4
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
59.9
0.39
1.4
71.31
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011992
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012527
19675 - 32824
13150