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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2269487_2276270_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2269487 - 2276270
Intron Length:
6784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTGAGCT
Flanking Amino Acid:
PYEKQGIKLFSCLLVMIPPS
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1.1
74.1
38.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
39.1
-1.2
2.9
49.8
46.4
Minor BPS
62.6
0.47
1.7
81.75
39.4

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011545
2262625 - 2281933
19309