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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2269487_2281871_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2269487 - 2281871
Intron Length:
12385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTGAGCT
Flanking Amino Acid:
MRQKQDFLAGCLLVMIPPS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
62.6
0.47
1.7
81.75
39.4

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043792
2261309 - 2306781
45473