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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2269487_2305923_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2269487 - 2305923
Intron Length:
36437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTGAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
64.2
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
27.6
-2.6
3
34.8
41.4
Minor BPS
62.6
0.47
1.7
81.75
39.4

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025064
2262563 - 2306781
44219