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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2276407_2281871_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2276407 - 2281871
Intron Length:
5465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTGCTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.1
0.81
0.7
84.4
23.5
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
73.8
0.82
1.3
82.98
39.3

Associated Gene:

Gene:
SLC45A1
Ensembl Gene ID:
ENSAPLG00000011092
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011545
2262625 - 2281933
19309