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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_228413_229719_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
228413 - 229719
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGCTTTAT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTACCTAGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTCTTTACCT
Flanking Amino Acid:
PGLAYVGEKKPMTDIGDYIG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.3
64
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.6
0.26
1.7
69.8
35.7
Minor 5ss
36.8
-1.5
3.2
47.6
42
Minor BPS
66.1
0.58
1.7
78.9
44

Associated Gene:

Gene:
GABRD
Ensembl Gene ID:
ENSAPLG00000010539
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010968
228307 - 236532
8226