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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_229831_230380_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
229831 - 230380
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGCTATTCAAAT
Flanking Amino Acid:
YARNFRPGIGGPPVNVALAI
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
88.9
0.88
0.7
88.2
29.1
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
48.8
-0
1.8
67.38
43

Associated Gene:

Gene:
GABRD
Ensembl Gene ID:
ENSAPLG00000010539
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010968
228307 - 236532
8226