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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2307803_2313179_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2307803 - 2313179
Intron Length:
5377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTACTGATAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
75
37.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
37.3
-1.4
3.1
48.8
47.4
Minor BPS
47
-0.1
2.2
70.84
40.2

Associated Gene:

Gene:
ERRFI1
Ensembl Gene ID:
ENSAPLG00000011020
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011472
2307182 - 2315306
8125