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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2313376_2313491_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2313376 - 2313491
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTATTTCATT
Flanking Amino Acid:
TCWGSHSGFENTFFNVDPIA
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.4
26.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.7
84.7
29.8
Minor 5ss
32.5
-2
3.3
40.3
40.1
Minor BPS
56.6
0.29
1.9
78.91
37.7

Associated Gene:

Gene:
ERRFI1
Ensembl Gene ID:
ENSAPLG00000011020
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011472
2307182 - 2315306
8125