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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2313569_2314107_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2313569 - 2314107
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCACCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTTTCTCACCT
Flanking Amino Acid:
PSAEQHLPSIGHSSNHVLTS
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.6
0.58
0.8
73
31.7
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
55.3
0.24
1.8
73.91
43.2

Associated Gene:

Gene:
ERRFI1
Ensembl Gene ID:
ENSAPLG00000011020
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011472
2307182 - 2315306
8125