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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2323146_2323675_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2323146 - 2323675
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCACCACCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTCTGTCACC
Flanking Amino Acid:
PLAKDKMMNGAHYCYSESRV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
61.3
0.26
0.9
50.7
32.7
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
50
-0
2.4
70.96
40.7

Associated Gene:

Gene:
PARK7
Ensembl Gene ID:
ENSAPLG00000010789
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011256
2314183 - 2328109
13927