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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2327369_2327974_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2327369 - 2327974
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATTCTTGAATT
Flanking Amino Acid:
IPTDIMRRAGIKVTVAGLTG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
73.7
0.53
0.9
74.3
35.9
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
69.3
0.68
1.3
80.6
34.9

Associated Gene:

Gene:
PARK7
Ensembl Gene ID:
ENSAPLG00000010789
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011256
2314183 - 2328109
13927