Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2332298_2332736_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2332298 - 2332736

Intron Length:

439

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGATTG

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTGTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

CATCTTGTAAAA

Flanking Amino Acid:

MGEERTVSGCQPCLYGTF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

72.8

39.3

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

70.4

0.46

1.1

71.4

38.6

Minor 5ss

-0.9

3.1

57.3

46.8

Minor BPS

44.8

-0.4

54.34

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010639

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011085

2332033 - 2335212

3180