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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2332804_2332894_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2332804 - 2332894
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
AAATGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCCCTTTAAAT
Flanking Amino Acid:
QPNGSCKNWTKCSANQVVKP
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.7
0.49
1
66.8
43.9
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
64.6
0.54
1.4
74.3
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010639
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011085
2332033 - 2335212
3180