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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2333032_2333255_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2333032 - 2333255
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTCTTAAAGA
Flanking Amino Acid:
PGIPLFVTVPGKNIQMDIIR
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.6
0.62
0.8
73
31.8
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
52.7
0.08
2
64.77
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010639
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011085
2332033 - 2335212
3180