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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2333391_2335087_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2333391 - 2335087
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
AGAAAGTGAACA
Flanking Amino Acid:
KKKLHAVFKKMHTTPEQSVQ
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.4
35
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
39
-1.2
3.1
47.7
42.3
Minor BPS
41.5
-0.6
2.2
50.85
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010639
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011085
2332033 - 2335212
3180