Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_23390_23730_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23390 - 23730

Intron Length:

341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTCCA

5'SS Class:

major

3'SS Sequence:

TTTTGTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

GTTTTGATAATT

Flanking Amino Acid:

AQHLNIVTVREIVVGSNMDK

Intron Amino Acid Position:

418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

65.3

40.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

82.6

0.73

0.9

81.2

36.5

Minor 5ss

35.8

-1.6

2.8

39.3

39.7

Minor BPS

50.3

0.09

2.3

77.07

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012527

19675 - 32824

13150