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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2344872_2346980_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2344872 - 2346980
Intron Length:
2109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCATCTTCTACT
Flanking Amino Acid:
NTSEMSHQLSADEDSRLNLE
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
83.5
0.75
0.8
77.4
30.1
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
54
0.21
1.9
72.86
43.9

Associated Gene:

Gene:
UTS2
Ensembl Gene ID:
ENSAPLG00000010554
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010978
2344769 - 2348451
3683