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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2357766_2357972_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2357766 - 2357972
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCACTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ACAATATAAACT
Flanking Amino Acid:
MVFKMSILKIH
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.6
0.67
0.9
76.5
37.4
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
46
-0.2
1.9
60.72
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025252
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035244
2357634 - 2359043
1410