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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2358067_2358821_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2358067 - 2358821
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCTGTTTAAAC
Flanking Amino Acid:
TVEVDLYTNKGLFRAAVPSG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
73.2
0.52
1
69.8
39.6
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
59.5
0.28
1.9
70.99
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025252
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035244
2357634 - 2359043
1410
ENSAPLT00000047064
2356451 - 2359043
2593
ENSAPLT00000044568
2354769 - 2359043
4275