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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2461452_2477944_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2461452 - 2477944
Intron Length:
16493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTATTTTAAAA
Flanking Amino Acid:
TEDDVVYRPGDCVYIESRRP
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
1
82.2
33.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
63.7
0.43
1.4
71.38
34.1

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718