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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2478016_2507326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2478016 - 2507326
Intron Length:
29311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTGTTAGTAATG
Flanking Amino Acid:
FICSIQDFKLSKRDHLLMNV
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
89.3
0.88
0.6
87.5
22.7
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
47.2
-0.3
2.2
59.51
43

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718