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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_249787_253403_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
249787 - 253403
Intron Length:
3617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTTCTGACAG
Flanking Amino Acid:
DFIRVKTHYSGDILITNLDA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75
38.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.3
0.57
0.9
70.1
35.2
Minor 5ss
47
-0.3
2.8
56.2
48
Minor BPS
51.4
-0
1.9
65.14
42.5

Associated Gene:

Gene:
PRKCZ
Ensembl Gene ID:
ENSAPLG00000010027
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010479
249611 - 293056
43446