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Intron Name: Anas_platyrhynchos_platyrhynchos_22_2507433_2508870_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2507433 - 2508870

Intron Length:

1438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTAG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTCTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTAAC

U12 Branch Point Sequence:

TTTTCTGTTTTT

Flanking Amino Acid:

HLVQDRHNENDSGRELVITD

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

76.7

34.9

Major BPS

51.7

0.04

1.3

55.3

40.3

Major PPT

75.9

0.58

72.9

37.4

Minor 5ss

39.7

-1.2

2.8

46.1

43.6

Minor BPS

38.1

-0.8

3.8

74.98

42.6

Associated Gene:

Gene:

RERE

Ensembl Gene ID:

ENSAPLG00000009581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009997

2460981 - 2611698

150718