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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2508968_2512401_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2508968 - 2512401
Intron Length:
3434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTCTAATACCA
Flanking Amino Acid:
YVDTYHAAALRGKCNISHFS
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
44.5
-0.4
2
61.28
38.2

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718