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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2526146_2529811_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2526146 - 2529811
Intron Length:
3666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAA
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
GEIRVGPSHQAKLPDLQPFP
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
57.7
0.19
1.3
51.7
43.9
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718