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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_253526_257647_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
253526 - 257647
Intron Length:
4122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CAGTCATAAATT
Flanking Amino Acid:
PITLKWIDDEGDPCTISSQM
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
64.6
35.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
43.2
-0.7
3.1
58.4
46.5
Minor BPS
49.4
0.03
2
65.88
45

Associated Gene:

Gene:
PRKCZ
Ensembl Gene ID:
ENSAPLG00000010027
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010479
249611 - 293056
43446