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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2542791_2568139_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2542791 - 2568139
Intron Length:
25349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGGAAA
5'SS Class:
major
3'SS Sequence:
TCTTTTATCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTTGTTATCT
Flanking Amino Acid:
IEKCWTEDEVKRFIKGLRQY
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.6
39.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85
0.79
0.7
81
29.3
Minor 5ss
30.3
-2.3
3.3
35.3
43.5
Minor BPS
60.6
0.41
2.3
87.15
38.9

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718