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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2568221_2597764_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2568221 - 2597764
Intron Length:
29544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GCCCCTCTAACA
Flanking Amino Acid:
RKELLPNKETGELITFYYYW
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
68
38.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
83
0.74
0.8
77.1
36.1
Minor 5ss
32.4
-2
2.6
39.4
38.9
Minor BPS
49.9
-0
1.7
58.02
41.5

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718