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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2597928_2600052_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2597928 - 2600052
Intron Length:
2125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTACTTACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGTTCTTTACTT
Flanking Amino Acid:
TPSRPPSSEFLDLSSASEDD
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
65.7
40.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
78.6
0.64
0.9
77.6
35.6
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
70
0.71
1.6
84.22
37.1

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718