Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2600146_2600906_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2600146 - 2600906

Intron Length:

761

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTACGTCCT

5'SS Class:

major

3'SS Sequence:

TTCCTGCCCCAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CATTTCTAAGCT

Flanking Amino Acid:

GYACRHCFTTTSKDWHHGGR

Intron Amino Acid Position:

472

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.1

60.5

44.1

Major BPS

100

1.24

0.5

100

Major PPT

62.5

0.28

60.1

35.8

Minor 5ss

-1.4

3.2

56.6

41.4

Minor BPS

52.9

0.17

1.9

72.35

44.7

Associated Gene:

Gene:

RERE

Ensembl Gene ID:

ENSAPLG00000009581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009997

2460981 - 2611698

150718