Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2601107_2602071_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2601107 - 2602071

Intron Length:

965

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAGGCTTA

5'SS Class:

major

3'SS Sequence:

GTTACACAAATAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

TGTTACACAAAT

Flanking Amino Acid:

SMRTRRSRGSMSTLRSGRKK

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

66.3

42.1

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

0.11

49.1

38.6

Minor 5ss

46.5

-0.4

3.2

64.2

47.3

Minor BPS

47.7

-0

2.1

73.25

42.4

Associated Gene:

Gene:

RERE

Ensembl Gene ID:

ENSAPLG00000009581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009997

2460981 - 2611698

150718