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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2603628_2604264_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2603628 - 2604264
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CTCTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCACACAC
Flanking Amino Acid:
RSSAKKSKTQEISRPNSPSE
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
68.6
36.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.4
0.73
0.7
76.8
25.2
Minor 5ss
31.8
-2.1
2.8
37.4
33.2
Minor BPS
42.2
-0.6
2
58.26
40

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718