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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2608327_2610035_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2608327 - 2610035
Intron Length:
1709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
CTTCTTCTAAAG
Flanking Amino Acid:
HLHQQDPLHQGSAGPVHPLV
Intron Amino Acid Position:
1367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
70.9
0.47
1
70.8
33.9
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
46.9
-0.3
1.8
54.14
40.9

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718