About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2610593_2611664_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2610593 - 2611664
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
GTTTGTTAAAAT
Flanking Amino Acid:
GHLPSQEDYYSRLKKEGDKQ
Intron Amino Acid Position:
1476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
49.3
0.02
2.1
73.53
43.4

Associated Gene:

Gene:
RERE
Ensembl Gene ID:
ENSAPLG00000009581
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009997
2460981 - 2611698
150718