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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_26536_27143_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26536 - 27143
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACAATGC
5'SS Class:
major
3'SS Sequence:
TTTGAAGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTCCACGACT
Flanking Amino Acid:
ERENGNHIPVESRFDRDSAG
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.1
53
39.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.7
0.53
1
65.6
44.3
Minor 5ss
36.7
-1.5
3.3
47.7
43.2
Minor BPS
58.4
0.34
1.9
80.83
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011992
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012527
19675 - 32824
13150