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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2660719_2661506_F

Intron Information:

Intron Rank:
132420
Intron Class:
major
Intron Phase:
Intron Coordinates:
2660719 - 2661506
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTTGC
5'SS Class:
major
3'SS Sequence:
TCATTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTCCATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
66.4
40.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.7
0.74
0.9
77.3
35.7
Minor 5ss
41.1
-1
2.8
53.5
43.7
Minor BPS
66.3
0.59
1.9
87.76
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021151
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029509
2660675 - 2661785
1111