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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2665739_2667032_F

Intron Information:

Intron Rank:
132422
Intron Class:
major
Intron Phase:
Intron Coordinates:
2665739 - 2667032
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
GTATTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
56.6
47.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.7
0.58
0.9
73.7
41.5
Minor 5ss
40.8
-1
2.9
49.6
46.4
Minor BPS
47.3
-0.1
1.9
68.06
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021151
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036329
2660675 - 2667119
6445